Bagel

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Home Web Links
Weblinks

Web sites, software and systems used by BAGEL.

University of Groningen
MolGen our research deparment
ref BAGEL1 publication of BAGEL (2006)
ref BAGEL2 publication of BAGEL2 (2010)
NCBI Resource for genome sequences
MolGen server Mirror of the NCBI genome database
BioPerl Perl toolbox
Glimmer ORF calling program
Prodigal ORF calling program
BLAST Protein search algorithm
HMMsearch hmm search program
PFAM PFAM hmm models database
TIGRFAM TIGRFAM hmm models database
Uniref Universel reference database for annotation proteins
PostgreSQL Database system used by BAGEL
Ubuntu Linux platform on which BAGEL runs
Joomla Web interface for BAGEL

 

Last Updated on Thursday, 07 February 2013 16:42